PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G052900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 332aa MW: 37286.9 Da PI: 5.6205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G052900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	37	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt++e+l+Lie++r e+r+rrg+ + +p+W ++s++++++g++r+p+qC+++w+nl+++++kike+e++ ++e s + + ++ Aqcoe1G052900.1.p 37 RWTRHEILVLIEGKRVAESRVRRGRtgngsglnQVEPKWVSISSYCKRHGVNREPVQCRKRWSNLAGDFRKIKEWESQIKEEGDSFWIMRND 128 8*******************98555566666********************************************9999889998888 PP trihelix 85 le 86 l+ Aqcoe1G052900.1.p 129 LR 130 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-11	37	122	No hit	No description
PROSITE profile	PS50090	6.342	37	102	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.1E-5	37	101	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MTSPEEEKPV IVTHTNGKQT SVVDGGDDGS KTPRLPRWTR HEILVLIEGK RVAESRVRRG 60 RTGNGSGLNQ VEPKWVSISS YCKRHGVNRE PVQCRKRWSN LAGDFRKIKE WESQIKEEGD 120 SFWIMRNDLR RERKLPGFFD REIFDVLEKG GLTVMVTGTE LVAVTGEEEE EEAVFDSGRT 180 AAADDGLFSD FEQTKQEDEE MGETPMTMEC PKTKVAAPLP ISERRYQPLY KALFDEGRMN 240 LKPPGLNSEK GPPCREGQKR RRVSSDDGGD TSLQEQLVKV LESNSKMLAA QLEAQNTNCH 300 LDRDQRKDQG DSLIAVLNKL ADALGKIAEK I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	262	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249232.1	1e-140	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-101	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2G5EDR9	0.0	A0A2G5EDR9_AQUCA; Uncharacterized protein
STRING	Aquca_009_00473.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-102	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G052900.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]