PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G017300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 383aa    MW: 41576.5 Da    PI: 9.8157
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G017300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.28.8e-4279156178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +C vegC+ dl++ak y++rhkvC +hsk+p+v+v gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q+
  Aqcoe1G017300.1.p  79 RCSVEGCKLDLTDAKPYYSRHKVCGMHSKTPKVIVGGLEQRFCQQCSRFHLLCEFDQGKRSCRRRLAGHNERRRKPQP 156
                        6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3374141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.72777154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-4078159IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3080153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEMGSSSFAG GGGKGASGSS DSSLNGLKFG KKIYFEDVGI GVLGKSSVGS PSILVSEARL  60
PPASSVKKGR GVLQGQPPRC SVEGCKLDLT DAKPYYSRHK VCGMHSKTPK VIVGGLEQRF  120
CQQCSRFHLL CEFDQGKRSC RRRLAGHNER RRKPQPGSIF SPRYGRVSPS FQENSTRGGG  180
FLMDFTAYPR LAGRDAWQTV KAGNWADGNQ TSPIKKLLPH QWQGNSENPP PIVYSQAPHP  240
YLQGVASGSI FSSTRIPSAE CFAGVSDSSC ALSLLSNQPW DPRNQTSDLE VNNIVNGEGV  300
SMARSIAPHS AVVTNFTNNT WNFKGNSEVS GSSHEIPRQV SQPVTNHFSS ELDLAQQGNR  360
QYMEIRHSRD FGSSTHQMHW SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28801531184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265853.11e-160PREDICTED: squamosa promoter-binding-like protein 14
TrEMBLA0A2G5ECB10.0A0A2G5ECB1_AQUCA; Uncharacterized protein
STRINGAquca_009_00161.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-55squamosa promoter binding protein-like 9