PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G006600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YC
Protein Properties Length: 284aa    MW: 31314.7 Da    PI: 4.9211
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G006600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.65e-176861898
              NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                       ++++P +rikki++adedv +i+  +P l+s+a e f+ +l  r++  + +   +t+    ++++v + +++dfl +iv +
  Aqcoe1G006600.1.p  6 DTRFPASRIKKIMQADEDVGKIALAVPLLVSRALESFLEDLLHRTYDITLQRGAKTVSSFHLKQCVHSYNVYDFLREIVSK 86
                       5789*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-23372IPR009072Histone-fold
SuperFamilySSF471133.32E-19488IPR009072Histone-fold
PfamPF008083.6E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSRALE SFLEDLLHRT YDITLQRGAK  60
TVSSFHLKQC VHSYNVYDFL REIVSKVPDL GGSDAAAEDR SVAKRRKTLD DEDNDTDDEA  120
KRSRLHDAGS NSSSGRGRGR GRGRGRGRNS QSAQSVKCED DPDMSPQHDK QNMDPMRVDI  180
EMEARTPVGG STNLAVRNFD LNVDLHVNGD TTVTVPAPPV SVPAATVSVP AAPISSTDPP  240
EMQHEEYPGW SHSDMEKVPI DPLQLVHLNR SLDDDDEDYD EEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137146RGRGRGRGRG
2137147RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026415351.18e-96dr1-associated corepressor-like
RefseqXP_026415352.18e-96dr1-associated corepressor-like
RefseqXP_026415353.18e-96dr1-associated corepressor-like
TrEMBLA0A2G5EBV50.0A0A2G5EBV5_AQUCA; Uncharacterized protein
STRINGAquca_009_00062.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.19e-53NF-YC family protein