PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G003200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 101aa MW: 11393.4 Da PI: 10.0308 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53 | 4.7e-17 | 50 | 82 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C C+tt+Tp+WR++p+g +LCnaCGl+y++ Aqcoe1G003200.1.p 50 CLACHTTSTPMWRKDPNGVGQLCNACGLKYKRV 82 778****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.877 | 44 | 80 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-11 | 44 | 96 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-13 | 44 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.3E-16 | 49 | 82 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.3E-14 | 50 | 82 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.86E-10 | 50 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MPMFGILGYG WYDPRCYCCE YSSYVNMAQV KAAGPVLMKP NFSTQQVKMC LACHTTSTPM 60 WRKDPNGVGQ LCNACGLKYK RVERRVFGTT KPNKKKPRTQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 96 | KRVERRVFGTTKPNKKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 2e-11 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G003200.1.p |