PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1291s0001.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 96aa    MW: 11108.8 Da    PI: 10.4655
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1291s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.3e-101052244
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        +ien++ r  ++ kR +g  K  +EL +LC++ ++ i ++++ 
  Aqcoe1291s0001.1.p 10 FIENNTIRRASYRKRMKGFKKMLSELTTLCGVMACAITYGPNA 52
                        8*****************88889*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-18181IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.937161IPR002100Transcription factor, MADS-box
PfamPF003194.6E-111052IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MVRGKVKHQF IENNTIRRAS YRKRMKGFKK MLSELTTLCG VMACAITYGP NAQAPEIWPN  60
EDEARKVLTR FQNCSPEEKA RNVRVDSRSY RQKED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496299.11e-24agamous-like MADS-box protein AGL80
TrEMBLA0A2G5E4G91e-55A0A2G5E4G9_AQUCA; Uncharacterized protein
STRINGAquca_012_00123.12e-56(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-22AGAMOUS-like 87