PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe0085s0001.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 648aa MW: 75126.4 Da PI: 8.2761

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe0085s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	1e-16	50	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 ++Y+eY ++ GF vrk++s+k+ +e+t+ +fvCs+egk+ +++++ ++ +r+ ++ + +C+a+l + ++ + kw v+ ++ +HnH Aqcoe0085s0001.1.p 50 EYYEEYCRQNGFCVRKRSSNKTiIGVDEVTSVKFVCSREGKHIKRTENgaNNVPSRSCSTIKRECQACLWILYNQkKLKWSVSVFSDDHNH 140 69****************99766788*********9999999766666777888899****9999899*********** PP FAR1 88 ela 90 +++ Aqcoe0085s0001.1.p 141 KFV 143 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-14	50	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-24	261	337	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	422	458	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MGVTNTSSSG LDGTDKIFEN GKTVDDHIYG EKLKAPYVGL SFDSIDEAKE YYEEYCRQNG 60 FCVRKRSSNK TIIGVDEVTS VKFVCSREGK HIKRTENGAN NVPSRSCSTI KRECQACLWI 120 LYNQKKLKWS VSVFSDDHNH KFVTPIKRMH MRCNRHMPEA AKDLTEKFSR ENIPVSKVHS 180 LLGGSNIGFD ERDCYNYLRT NKHQNLEEGD ASSVLTYFQR KLRENPQFFY NVQVDIVSGR 240 AVNFFWVDTR SRMAYEHFGD VVTFDTTYKT NTYSMPFAPF TGVNHHFQTI QFGCALLQDE 300 TEVSFLWLFT TWLEAMGGRA PKSIITDQDT NLKKFLEKYE KALEKLVRNE MDEDYLSEHK 360 DRIVHERDLL LKHTGDVYTR NIFKKFSNEL MKVNNFKTSE LARDGVYETY LVTNKFCTVE 420 KFIVTWNKET SEGSCECNHF HFTGMLCRHL LKIFDRLDVD QIPQHFILRR WTKGANKFRI 480 IDEQVEQSSQ DCSTTFRLSH LCRKATQMCC IASEHPNLYK KALEGIDKAI KDVLEERDMI 540 VAISMETSIE APTTQEVVSP VCPILILDPH VSQTVGRKQK EDDKKKRKES NDRWKRPIEV 600 ALKKKRRTCS LCKSPDHDKR SCPRNPNCQS KTHCEPSVKV ELVQDKD*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MGVTNTSSSG LDGTDKIFEN GKTVDDHIYG EKLKAPYVGL SFDSIDEAKE YYEEYCRQNG  60
FCVRKRSSNK TIIGVDEVTS VKFVCSREGK HIKRTENGAN NVPSRSCSTI KRECQACLWI  120
LYNQKKLKWS VSVFSDDHNH KFVTPIKRMH MRCNRHMPEA AKDLTEKFSR ENIPVSKVHS  180
LLGGSNIGFD ERDCYNYLRT NKHQNLEEGD ASSVLTYFQR KLRENPQFFY NVQVDIVSGR  240
AVNFFWVDTR SRMAYEHFGD VVTFDTTYKT NTYSMPFAPF TGVNHHFQTI QFGCALLQDE  300
TEVSFLWLFT TWLEAMGGRA PKSIITDQDT NLKKFLEKYE KALEKLVRNE MDEDYLSEHK  360
DRIVHERDLL LKHTGDVYTR NIFKKFSNEL MKVNNFKTSE LARDGVYETY LVTNKFCTVE  420
KFIVTWNKET SEGSCECNHF HFTGMLCRHL LKIFDRLDVD QIPQHFILRR WTKGANKFRI  480
IDEQVEQSSQ DCSTTFRLSH LCRKATQMCC IASEHPNLYK KALEGIDKAI KDVLEERDMI  540
VAISMETSIE APTTQEVVSP VCPILILDPH VSQTVGRKQK EDDKKKRKES NDRWKRPIEV  600
ALKKKRRTCS LCKSPDHDKR SCPRNPNCQS KTHCEPSVKV ELVQDKD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	578	587	QKEDDKKKRK
2	585	606	KRKESNDRWKRPIEVALKKKRR
3	602	606	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-61	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe0085s0001.1.p