PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031816.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 320aa    MW: 35023.6 Da    PI: 12.4217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031816.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-193075147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw + 
      Aco031816.1 30 KGPWSPEEDEALQRLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 75
                     79******************************.***********985 PP
2Myb_DNA-binding53.26.8e-1784126347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed+ +v+a++++G++ W+tIar +  gRt++ +k++w++ 
      Aco031816.1  84 PFTPDEDDAIVRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 126
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0032580IPR017930Myb domain
SuperFamilySSF466891.8E-3227123IPR009057Homeodomain-like
SMARTSM007171.7E-172978IPR001005SANT/Myb domain
PfamPF002493.9E-193075IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-263183IPR009057Homeodomain-like
CDDcd001672.91E-163274No hitNo description
SMARTSM007173.3E-1481129IPR001005SANT/Myb domain
PROSITE profilePS5129419.67482131IPR017930Myb domain
CDDcd001674.97E-1184127No hitNo description
PfamPF002497.0E-1484126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2284130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRNSSGGSSS SSSSSSKEGV GVGVVMDRIK GPWSPEEDEA LQRLVQKHGA RNWSLISKSI  60
PGRSGKSCRL RWCNQLSPQV EHRPFTPDED DAIVRAHRRF GNKWATIARL LSGRTDNAIK  120
NHWNSTLKRN TRPPPRPAAP RFRQRRRAGA APPKRASSVG PAVSAGSASA PAAPPARISA  180
LHHHTHPPPL RRRETTPARR AERVPRGAEN GGIVPLPPRR HHLLLDRPRS DDPVTSSPSP  240
SRARSRPPLR PTPPPPRRPA APPTAPIQRG VLALMQGDDP QRGAELHAGL ERHHPRAPAP  300
SAREAPQRRR EPPRRRAIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-38271294106B-MYB
1h88_C1e-372912957157MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-372912957157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614581e-167KM661458.1 Ananas bracteatus clone 43635a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO231603e-64MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A199VPN21e-92A0A199VPN2_ANACO; Transcription factor MYB44
STRINGXP_008799576.15e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-62myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]