PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco031731.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 363aa MW: 39745 Da PI: 6.8339

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco031731.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276.2	1e-84	23	328	72	374
GRAS 72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 +++ + ++a+++++ +sP++kfsh+t NqaI +a++geervHiiD+di+qGlQWp L+q LasRp + slRiTg+gs s e le+tg+rL++fA Aco031731.1 23 SHHNRIFNAFQVYNSISPLVKFSHFTSNQAIFQALDGEERVHIIDLDIMQGLQWPGLFQILASRPLKLRSLRITGLGS----SLELLEATGRRLSDFA 116 446778899*******************************************************************....9*********** PP GRAS 170 eelgvpfefnvlvakrledl.....eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflea 260 ++lg+pfef+++ + ++ d +++ + +E+ +V++++ h l+d ++s e ++++k+ ++P++v+vveq++ + +++Fl rf+ea Aco031731.1 117 AALGLPFEFQPV-EGKIGDQskaggGGGAFAPRDgREVAVVHWMH--HCLYDVTGSDEA----AVSVIKNvIRPRLVTVVEQDLGRHGGDFLGRFVEA 207 *******7.44444441111122344444466777777776..666666666666....7788876379********************* PP GRAS 261 leyysalfdsl.eaklpres.....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls.ekaakqaklllrkvk.sdgyr 350 l+yysa+fd+l e +++ s er+ vEr+llg ei+n+va g +r+ + +++W e +++aGF++v+l aa+qa+lll + ++gy+ Aco031731.1 208 LHYYSAVFDALgEGAAAEGSreeeeAERHDVERQLLGAEIRNIVAVGGPKRTGEVA-VGRWGEEMRRAGFEQVSLAgGPAAAQANLLLGMRLpWKGYT 304 *******77666665566666899******************998887.9************9625799****9998* PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 + ee g+l lgWkd +L+++SaW+ Aco031731.1 305 LVEEAGCLKLGWKDLSLLTASAWK 328 *********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.899	1	306	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-82	23	328	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MYKLNIFCVY SPLIHHHKPL VTSHHNRIFN AFQVYNSISP LVKFSHFTSN QAIFQALDGE 60 ERVHIIDLDI MQGLQWPGLF QILASRPLKL RSLRITGLGS SLELLEATGR RLSDFAAALG 120 LPFEFQPVEG KIGDQSKAGG GGGAFAPRDG REVAVVHWMH HCLYDVTGSD EAAVSVIKNV 180 IRPRLVTVVE QDLGRHGGDF LGRFVEALHY YSAVFDALGE GAAAEGSREE EEAERHDVER 240 QLLGAEIRNI VAVGGPKRTG EVAVGRWGEE MRRAGFEQVS LAGGPAAAQA NLLLGMRLPW 300 KGYTLVEEAG CLKLGWKDLS LLTASAWKTG NSHGPAEGGE DRDHVQPPRQ QQQHHHHSSL 360 LT*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MYKLNIFCVY SPLIHHHKPL VTSHHNRIFN AFQVYNSISP LVKFSHFTSN QAIFQALDGE  60
ERVHIIDLDI MQGLQWPGLF QILASRPLKL RSLRITGLGS SLELLEATGR RLSDFAAALG  120
LPFEFQPVEG KIGDQSKAGG GGGAFAPRDG REVAVVHWMH HCLYDVTGSD EAAVSVIKNV  180
IRPRLVTVVE QDLGRHGGDF LGRFVEALHY YSAVFDALGE GAAAEGSREE EEAERHDVER  240
QLLGAEIRNI VAVGGPKRTG EVAVGRWGEE MRRAGFEQVS LAGGPAAAQA NLLLGMRLPW  300
KGYTLVEEAG CLKLGWKDLS LLTASAWKTG NSHGPAEGGE DRDHVQPPRQ QQQHHHHSSL  360
LT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-115	9	327	77	377	Protein SCARECROW
5b3h_D	1e-115	9	327	77	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020080436.1	0.0	scarecrow-like protein 23
Swissprot	Q9FHZ1	1e-125	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A199UI80	0.0	A0A199UI80_ANACO; Scarecrow-like protein 23
STRING	XP_008799890.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	1e-119	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco031731.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]