PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031295.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 320aa    MW: 36247.1 Da    PI: 8.9951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031295.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.89.2e-328117138128
          NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +i  + P++L  k+  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v+ k +++  g+kk Lvfy+g+ap+g ktdW+mheyrl
  Aco031295.1  81 EIRAHSPRRLG-KALFGQREWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVVPKgTHRPLGIKKALVFYSGKAPRGAKTDWIMHEYRL 171
                  6778999***7.4456899*************************************9866777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.01537197IPR003441NAC domain
PfamPF023655.3E-1575171IPR003441NAC domain
SuperFamilySSF1019414.05E-3881197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAGKVTLTKY EKLKMQAVLV KDACEIALQG KKKKLEGMTD KLFEEKDKMA LANLYLELDD  60
SVLFNIDQLE ELLPPGRICF EIRAHSPRRL GKALFGQREW YFFTPRDRKY PNGSRPNRAA  120
GRGYWKATGA DKPVVPKGTH RPLGIKKALV FYSGKAPRGA KTDWIMHEYR LADTSRSPNK  180
KGSLRLDDWV LCRLYNKKNS WEKMQSQKEE ASMMTTDSTD DSGSNSFRTP ESDIDNDVFD  240
KAAARPEAYP NHQSTEVCQI KEDSEWFMDL NLDDLQSAYT GFGPATPTPT FDMSNPSFYF  300
PGLSSPKPNS NQTMNLPPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-569220363174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102207.11e-170NAC domain-containing protein 68-like
SwissprotQ52QH44e-75NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A199V2501e-168A0A199V250_ANACO; NAC domain-containing protein 68
STRINGXP_008787999.12e-98(Phoenix dactylifera)
STRINGXP_008792530.15e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-58NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]