PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco031278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | Dof | ||||||||
Protein Properties | Length: 178aa MW: 18973.5 Da PI: 10.2228 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 105.4 | 3.2e-33 | 21 | 77 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC stntkfCyynny++sqPr++C+aC+ryWt+GGalrnvP Ggg +k+ Aco031278.1 21 PPLQCPRCGSTNTKFCYYNNYNTSQPRHYCRACERYWTHGGALRNVPPGGGGGGKKR 77 5689*******************************************9887654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.9E-30 | 23 | 72 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.618 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-17 | 25 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MAAEARKPKQ QQQQRQAPHP PPLQCPRCGS TNTKFCYYNN YNTSQPRHYC RACERYWTHG 60 GALRNVPPGG GGGGKKRAAK SRTADPNFPT PNSSKLPKLN IIADAAAAAA AMAPPPPTPI 120 FHGGIEGLAL RPAAINPGEF FGGLRGFQPY SNNNMNFPHV PPHGTVNNMC GNCLTGL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081558.1 | 6e-83 | dof zinc finger protein DOF1.4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-23 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco031278.1 |