PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco031080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11388.4 Da PI: 10.7778 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 18 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ +++ +a + + ++ +W +ar +g g+t++++k ++ k+ Aco031080.1 18 QWTAKQNKKFERALAVYDKDtpdRWYNVARAVG-GKTPEEVKQHYEKL 64 7********************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.738 | 14 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-8 | 15 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.39E-13 | 17 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 18 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-7 | 18 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-6 | 19 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 101 aa Download sequence Send to blast |
MASAGPSKSS SRSTAGSQWT AKQNKKFERA LAVYDKDTPD RWYNVARAVG GKTPEEVKQH 60 YEKLVRDVQQ IESGRXTWNN KASAGRFLRP QSWSPKREEK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-28 | 15 | 85 | 7 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081175.1 | 2e-67 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 2e-28 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2P5CA43 | 1e-28 | A0A2P5CA43_PARAD; Octamer-binding transcription factor | ||||
STRING | evm.model.supercontig_62.157 | 5e-30 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco031080.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|