PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030901.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 617aa    MW: 69070.9 Da    PI: 7.0476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030901.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-14413459455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Aco030901.1 413 NHVLAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYVKQLR 459
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-529193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.923409458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-19412473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-20413475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-15413463No hitNo description
PfamPF000104.6E-12413458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-18415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVALSPIRLQ KALQSVAQSI QWTYSLFWNP CPQQGVLVWG DGYYNGAIKT RKTVQPAEVS  60
AEEVTLQRSQ QLRELYESLS AGEASQQQQQ QLQLARRPSA ALSPEDLTES EWFYLMCISF  120
SFPPGSGLPG KAFARRRHVW LTRANEADSK VFSRAILAKT VVCIPLMDGV LELGTTEMVE  180
EDTGLIKHAK SFFAEHHEIQ SMPALSEQST SNPAKYNEPP SFQGATTPNA EHDELMQLGL  240
SQNVRLGSPD DCSNNLNTQL QMVGVCCNTS GVSNHQREDE TYHCWNFLHE DICSELQQQS  300
SVQAQELSQE DAHYSETVTT ILRHNSSRGD ESKSNDYFVP SRQTAFAGWN STRDHPQIVL  360
SEGTSQWLLK TMLFRVPTLH CRYKDENSPP SIEGEGGGSR SRKGAAQEEP SANHVLAERR  420
RREKLNERFI VLRSLVPFVT KMDKASILGD AIEYVKQLRK RIQDLESRNR QMESLTKTAE  480
LQRPGSSKDP NVPRGSGSPQ GSGVDHVATS QLKAFSSDKR KIRVLEGTRV VDAPSTNVQV  540
SIIEADALLE MQCPYKEGLL LKIMQTIHEL RLEIMSIQSS SVNGTLFAEL RAKVKEMNGK  600
RASILEVKKA IYRVFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-20819312192Transcription factor MYC3
4rqw_B8e-20819312192Transcription factor MYC3
4rs9_A8e-20819312192Transcription factor MYC3
4yz6_A8e-20819312192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417422ERRRRE
2418423RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080656.10.0basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A199V6V70.0A0A199V6V7_ANACO; Basic helix-loop-helix protein A
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-146bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]