PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030627.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 309aa    MW: 34914 Da    PI: 6.1255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030627.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
      Aco030627.1 28 KGSWTQDEDARLIAYIQKHGHGNWRALPKKAGLLRCGKSCRLRWINYL 75
                     799*****************************99************97 PP
2Myb_DNA-binding54.23.4e-1781125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e+l++++ +lG++ W++Ia+ ++ gRt++++k+ w+++
      Aco030627.1  81 RGNFTKEEEEKLIKLHDLLGNR-WSKIASFLP-GRTDNEIKNIWNTH 125
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-241978IPR009057Homeodomain-like
PROSITE profilePS5129416.5482375IPR017930Myb domain
SuperFamilySSF466896.36E-3125122IPR009057Homeodomain-like
SMARTSM007176.1E-142777IPR001005SANT/Myb domain
PfamPF002496.8E-162875IPR001005SANT/Myb domain
CDDcd001673.81E-103075No hitNo description
PROSITE profilePS5129427.72376130IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2779130IPR009057Homeodomain-like
SMARTSM007174.6E-1680128IPR001005SANT/Myb domain
PfamPF002491.4E-1581125IPR001005SANT/Myb domain
CDDcd001672.39E-1183126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
REWASHYKYG WVMGRGRAPC CEKVGLNKGS WTQDEDARLI AYIQKHGHGN WRALPKKAGL  60
LRCGKSCRLR WINYLRPDIK RGNFTKEEEE KLIKLHDLLG NRWSKIASFL PGRTDNEIKN  120
IWNTHIKKKI ASKEASILSS SSTPRSRGLQ SEANRESESE HADRSLDTSS YSFDKLDARV  180
EPSINMSDMS RSSSSSSLAT NNHTGREEEA DATEGNSLAI PDVLIDPELI WSIMEDYDTK  240
MQSAQVGAEG KRFGKEGERS REWLEDIERE LMCDGPSCET EGDPISSYFQ MEPSSPSPLN  300
LHEVDMMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272613025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081120.10.0myb-related protein Zm1-like
SwissprotP200241e-78MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A199UK310.0A0A199UK31_ANACO; Myb-related protein Zm1
STRINGXP_008776690.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-61myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]