PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030433.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 298aa    MW: 32463.6 Da    PI: 7.9646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030433.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171962144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +g+WT+eEd+llv+++++ G g+W+  ++  g++R++k+c++rw
      Aco030433.1 19 KGPWTPEEDKLLVEYIQKNGHGSWRHLPKLAGLNRCGKSCRLRW 62
                     79****************************************** PP
2Myb_DNA-binding30.58.7e-1061852348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia++++ gRt++++k++w+++l
      Aco030433.1 61 RWSSIAARLP-GRTDNEIKNHWNTHL 85
                     4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5091470IPR017930Myb domain
SuperFamilySSF466893.11E-191681IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-181762IPR009057Homeodomain-like
SMARTSM007171.4E-161887IPR001005SANT/Myb domain
PfamPF002491.6E-151962IPR001005SANT/Myb domain
CDDcd001673.47E-142185No hitNo description
Gene3DG3DSA:1.10.10.601.4E-126396IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MCMRKMGRAP CCDEIGVKKG PWTPEEDKLL VEYIQKNGHG SWRHLPKLAG LNRCGKSCRL  60
RWSSIAARLP GRTDNEIKNH WNTHLRKKLL HMGIDPVTHK PRTDLNLFTS SLNLIKLQAD  120
ATHLAKLQLA QGLLQVLTTT ATTTTTSNSN PNMDLVGLMG LLSSLRNYEG FVNSNNSSPH  180
GIQGSHSSLS SLPNMGFENQ IGEFQAPIDH GPSPHELRVE SNGASKNLYT SSTMNSNAMP  240
PLVSATNSEN AQMYASNSGG SVPLSSPSST LFDAWEGLNL EDLNNDFGLK DMLENVS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114671.10.0transcription factor MYB34-like isoform X1
SwissprotQ9S9Z22e-51MYB93_ARATH; Transcription factor MYB93
SwissprotQ9SBF38e-52MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A199UGU90.0A0A199UGU9_ANACO; Transcription factor MYB39
STRINGXP_008778716.16e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-52myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]