PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030273.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 310aa    MW: 33573.6 Da    PI: 8.7205
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030273.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed e++++isw e+g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll++i+
   Aco030273.1  27 FLIKTYQMVEDGETDDVISWGEKGRSFVVWKPVEFARDILPVHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGERILLTEIR 114
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
   Aco030273.1 115 RRKSA 119
                   **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3719110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5523116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.43E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.0E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MANKDGGDGS DHGGGSKGRT NGGTAPFLIK TYQMVEDGET DDVISWGEKG RSFVVWKPVE  60
FARDILPVHF KHNNFSSFVR QLNTYGFRKV VPDRWEFANE NFRRGERILL TEIRRRKSAP  120
TARPPRAGKS NGGGSGGVPP PPPSSITNSA DGLSSSSASS AAARSPPTQN LLELANEYET  180
LKKDNEILTA ELARAKGHCE ELLGFLSKFL DVNKLDLALL MQEDATKTLE EVERVNNVGE  240
ESVTNSGGCV KLFGAHLKDF EGEDRKKGDG RKRGRYDEGD GCGIGKRPLK CHALWWAVGC  300
GVGRGGARP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-22611610129Heat shock factor protein 1
5d5v_B7e-22611610129Heat shock factor protein 1
5d5v_D7e-22611610129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662311e-76AK366231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2041F03.
GenBankHM4460331e-76HM446033.1 Hordeum vulgare subsp. vulgare heat shock factor B1 (HsfB1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081098.10.0heat stress transcription factor B-1-like
SwissprotQ67TP93e-79HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A199UMM80.0A0A199UMM8_ANACO; Heat stress transcription factor B-1
STRINGGSMUA_Achr10P30120_0014e-93(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-50heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]