PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029929.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 362aa    MW: 38508 Da    PI: 9.0577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029929.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1856106155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Aco029929.1  56 TKYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEQAACAYDIAARAMRG 106
                  69********.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-2956116No hitNo description
PfamPF008476.1E-1156106IPR001471AP2/ERF domain
SMARTSM003808.2E-3457120IPR001471AP2/ERF domain
PROSITE profilePS5103223.06457114IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2257115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3057114IPR001471AP2/ERF domain
PRINTSPR003673.5E-95869IPR001471AP2/ERF domain
PRINTSPR003673.5E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEDTSNAAAH HQYHQQKRCG GNSGRRAGAG AGAGAGVGAG AGAGAGAAQR EGGGGTKYRG  60
VRRRPWGRYA AEIRDPQSKE RRWLGTFDTA EQAACAYDIA ARAMRGLKAR TNFPIAHPAA  120
AFPVDPPNTG RGRPTRPSIL SIIIPTTTTT TTTTTTTATT ITSTLLIITT SACPCSPPPP  180
PPPVNRRVSF RGTSSTRTTA AHPAPTTLST SRLTTPSTTA ALLALLISRL FDGNSNTTTV  240
SISNNDNNSD DWDLFCSEPA DAGLLQEIIH GFCPHRRHRR NDKSKEMAGR IDAAGKFHAD  300
EMMTIEHGDR RGLVSLKSEV ETFDVDTSAD GPDNFPMVPQ GLLEDIVQYP DFFEILSAKL  360
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19571141472Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548774e-49EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082642.14e-78uncharacterized protein LOC109706269
RefseqXP_020112149.14e-78uncharacterized protein LOC109726767
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-31DORNROSCHEN-like