PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco029409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 262aa MW: 28580.2 Da PI: 5.4245 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.5e-35 | 22 | 112 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k ye+++d+++++++sw eng++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkkv +++ weF+++sF++g+++ll++i+ Aco029409.1 22 FLMKAYELVDDPAVDDVVSWGENGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANESFRRGERRLLSEIH 109 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ Aco029409.1 110 RRR 112 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.31E-33 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-54 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-37 | 19 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.2E-20 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.3E-31 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MHPSRGSGAG AGASALSSSP PFLMKAYELV DDPAVDDVVS WGENGSTFVV WRPAEFARDL 60 LPKYFKHNNF SSFVRQLNTY GFKKVVTDRW EFANESFRRG ERRLLSEIHR RRVCPAVAVA 120 VPMPIQSPGS SGEDPQALSL SSTTSPPQLL PPPPPPPHVD LAEENAWLRT ENARLSRELG 180 DMRGLCSNIF RLVTTYTADE GTSSVPPPPP PPAPPPPPQA LELFPRRTPE EEEDAVSVLF 240 GVPIRGRREP SARAPGADPE E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-26 | 9 | 111 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 9 | 111 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 9 | 111 | 16 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081205.1 | 0.0 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 8e-69 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A199UR50 | 0.0 | A0A199UR50_ANACO; Heat stress transcription factor B-2b | ||||
STRING | XP_008799550.1 | 4e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 3e-58 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Aco029409.1 |
Publications ? help Back to Top | |||
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