PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029197.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 797aa    MW: 88137 Da    PI: 7.9888
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029197.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22165266199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++ +++a+e+         ++ s++l+ +d+++ +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el
  Aco029197.1 165 FCKTLTASDTSTHGGFSVLRRHADEClppldmT-RQPPSQELVAKDLHSVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGEL 259
                  99****************************963.4445679************************************************..449999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+v+r+
  Aco029197.1 260 RVGVRRA 266
                  ****996 PP
2Auxin_resp107.61.4e-35291379183
   Auxin_resp   1 aahaastksvFevvYnPr......astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t+++F+v+Y+Pr      +s+seF+v++++++++lk++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp rW++SkWrsLk
  Aco029197.1 291 AWHAVNTGTMFTVYYKPRfpsaslTSPSEFIVPYHQYMESLKSNHSIGMRFKMRFEGEEAPEQRFTGTIVGIGDADPNRWHGSKWRSLK 379
                  89***************9666665689************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-41158280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-41159294IPR015300DNA-binding pseudobarrel domain
CDDcd100179.99E-21163265No hitNo description
PROSITE profilePS5086311.378165267IPR003340B3 DNA binding domain
PfamPF023623.7E-20165266IPR003340B3 DNA binding domain
SMARTSM010191.4E-22165267IPR003340B3 DNA binding domain
PfamPF065078.1E-33291379IPR010525Auxin response factor
PfamPF023091.0E-6706791IPR033389AUX/IAA domain
PROSITE profilePS5174520.189721796IPR000270PB1 domain
SuperFamilySSF542771.57E-9722790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MASSEVSVKG SNGRSEPSFS SSSCSEPVDG RGGGEAGGDA GHVSAGAPGG ANVSEDALYN  60
ELWHACAGPL VTVPRVQDLV FYFPQGHIEQ VEASTNQVAD QQMPVYNLPW KILCRVMNVE  120
LKAEVDTDEV YAQVTLIPES KLDEFSAEKD AVPPPPPPRP HVHSFCKTLT ASDTSTHGGF  180
SVLRRHADEC LPPLDMTRQP PSQELVAKDL HSVEWRFRHI FRGQPRRHLL QSGWSVFVSS  240
KRLVAGDAFI FLRGENGELR VGVRRAMRQQ TNVPSSVISS HSMHLGVLAT AWHAVNTGTM  300
FTVYYKPRFP SASLTSPSEF IVPYHQYMES LKSNHSIGMR FKMRFEGEEA PEQRFTGTIV  360
GIGDADPNRW HGSKWRSLKV RWDETSSIPR PERVSPWKIE PAVIPPPMNP LPLSRPKRLR  420
SNVVPSSPDS SVLTKEASSK VTADPSQHHG LPRVLQDQEV TALKNTFPDS NESNTALKPG  480
LWPPMREKAR YAAQKAHYQT PSGSHGFCSF FNPTLSDVNL WRTHYQDQEG KNTIYPSSWP  540
LMPVNSAFSI NGQLTSQAVE LPYQKTGNSR YGGQGAAYSA LQSPGIDQSS SNWFGHFVPG  600
QMENLSQNRS TKPQPSSAQG DVAKPKAGAS CKLFGIQINS SPATTEPAFP PTSLPYEPQL  660
NVLQKATRQK SQQRDTEKYS EPPKVTKSID AATNCNMEKN TQPCQPSFKD VQSKLHGGST  720
RSCTKVHKQG IALGRSVDLM KFNNYDELIA ELDRMFEFEG ELKAPLKNWR VVYTDDEGDM  780
MLVGDDPWPS FQVDRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-175404013354Auxin response factor 1
4ldw_A1e-175404013354Auxin response factor 1
4ldw_B1e-175404013354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106699.10.0auxin response factor 23-like isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A199UX460.0A0A199UX46_ANACO; Auxin response factor (Fragment)
STRINGGSMUA_Achr6P16450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]