PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029060.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 314aa    MW: 34930.6 Da    PI: 6.7014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-092758132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+WT eEdell ++++ +G g+W++ a++ +
      Aco029060.1 27 RGPWTLEEDELLMRYIAYHGEGRWNLLAARYQ 58
                     89*************************99877 PP
2Myb_DNA-binding49.31.2e-1561102346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ +eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Aco029060.1  61 KFNPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 102
                      789*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.39E-2125100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-102560IPR009057Homeodomain-like
PfamPF002491.5E-72760IPR001005SANT/Myb domain
PROSITE profilePS5129418.60254108IPR017930Myb domain
SMARTSM007179.9E-1458106IPR001005SANT/Myb domain
CDDcd001674.81E-1261102No hitNo description
PfamPF002491.4E-1461102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-1961103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
RPGARYVGKE GANNKQRGEE EITELRRGPW TLEEDELLMR YIAYHGEGRW NLLAARYQAR  60
KFNPEEQFLI LELHSKWGNR WSRIAQHLPG RTDNEIKNYW RTRVQKQARQ LKIDANSTMF  120
RDALRCYWMP RLLEKIGSQT SRSLHDPFST TPTAAAAATA AANANASSLS QDRHHVHHPP  180
FLDPIVPHPL ECSRSYDISG SENYSPSTSS GSTALPQVPQ FPEFPSSPTD ELNGVAFDAL  240
LGGHSSHGYY HQELDGLDLA SLSSSSLLGY ASTNCGVSVA SSNSCLDSVG DSSFWSCADE  300
LWHGRKLNEW GGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-14221082108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797802.11e-101transcription factor MYB62-like
TrEMBLA0A199VTY90.0A0A199VTY9_ANACO; Transcription factor MYB108
STRINGXP_008797802.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-50myb domain protein 62