PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco028872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29069.2 Da PI: 9.3693 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.3e-14 | 75 | 128 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++Ns ++ Lr+llP+ + ++kK+s +++ + v+YI +Lq Aco028872.1 75 KKLSHNAYERDRRKKLNSFYSSLRTLLPEsD--RTQKKMSIPSTVSRIVKYIPELQ 128 6789*************************66..67788***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.65E-9 | 72 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-13 | 72 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-15 | 73 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.138 | 74 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-12 | 75 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-9 | 80 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLALSPPLFS SPLENNVMSN ELRSDDRIFA SNRIQHEDGM LQQSLLFPSP PHPELEFDDQ 60 SRASNSAKDS PRSHKKLSHN AYERDRRKKL NSFYSSLRTL LPESDRTQKK MSIPSTVSRI 120 VKYIPELQSQ VARLSRRKEE VLAEIAKRKE GSPTKEGIEF LINVSATCLN SEEVMVHITV 180 LNKNISLPLS KFLKVLEGEG LQLMNASTLT SFGDKTFYNL HFQIKRCTGM EGQIFCEHLV 240 KVIKEKGRDD YSSIQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081245.1 | 0.0 | transcription factor bHLH100-like isoform X1 | ||||
Refseq | XP_020087425.1 | 0.0 | transcription factor bHLH100-like isoform X1 | ||||
Swissprot | A2WZ60 | 5e-49 | IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2 | ||||
TrEMBL | A0A199VYD7 | 0.0 | A0A199VYD7_ANACO; Transcription factor ORG2 | ||||
STRING | XP_008803360.1 | 1e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3280 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco028872.1 |