PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco028655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 29824.4 Da PI: 9.0128 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.4e-09 | 64 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+rWT+eE+e++ G + Wk+I +g ++t q++s+ qky Aco028655.1 64 RDRWTAEEHERF-------GRD-WKKIEDFVG-TKTTIQIRSHAQKY 101 79********98.......755.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-13 | 58 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.002 | 59 | 106 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-9 | 62 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 0.0033 | 63 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-5 | 65 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-6 | 66 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAVEREPAVR MPSYLHFPLF LALSFFRCFP CQLGSSSSAV IVGDMAAEGS GKKLRKPYTI 60 TKSRDRWTAE EHERFGRDWK KIEDFVGTKT TIQIRSHAQK YFLKVQKIGL AAHVPPPHPK 120 RKVAHQHPQS LPCTDVMLLR PSMACPSTSG SIIPTCNAWD ASSSAGGLMR KPLSYTQNIS 180 WIGSSSRAWL TNDGQEQLNP HSLHPGIPDF ARVYAFIGDM FDPEIACPVE VYVEKLKEMD 240 PITAKTVLIL VRNLTINLSS PEFESLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081353.1 | 0.0 | protein REVEILLE 8-like isoform X2 | ||||
Refseq | XP_020108471.1 | 0.0 | protein REVEILLE 8-like isoform X2 | ||||
Swissprot | Q8RWU3 | 3e-68 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A2H3Y2D6 | 1e-111 | A0A2H3Y2D6_PHODC; protein REVEILLE 8 | ||||
STRING | XP_008792393.1 | 1e-112 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-70 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco028655.1 |
Publications ? help Back to Top | |||
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