PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco028478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | YABBY | ||||||||
Protein Properties | Length: 54aa MW: 5988.82 Da PI: 6.2121 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 28.1 | 6.5e-09 | 33 | 52 | 5 | 24 |
YABBY 5 ssseqvCyvqCnfCntilav 24 s e+vCyv+C+fCntil+v Aco028478.1 33 SHQEHVCYVHCSFCNTILVV 52 6789***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-6 | 34 | 52 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
ELQPPESYLV GCGDGEGKWE MFDSAIAKCR SRSHQEHVCY VHCSFCNTIL VVK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM663674 | 4e-41 | KM663674.1 Ananas bracteatus clone 48195 microsatellite sequence. |
Link Out ? help Back to Top | |
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Phytozome | Aco028478.1 |