PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028438.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 397aa    MW: 42527.1 Da    PI: 5.7027
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028438.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-072253434
     zf-B_box  4 rkCpeHee.kelqlfCedCqqllCedClleeH 34
                 r C+ +    ++ l+C+ +  +lC  C + +H
  Aco028438.1 22 RPCDSCRGaAPAVLYCHVDAAFLCGACDSRIH 53
                 78*****8688*******************99 PP
2zf-B_box23.11.6e-0798140339
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                   + C+ +e+ +++  C+ +   lC+ C   +H+       H +
  Aco028438.1  98 VWLCEVCEQAPASVTCKADAAALCDGCDADIHSAnplarrHHR 140
                  689*****************************65788888655 PP
3CCT69.31e-23321365145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  Aco028438.1 321 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRAE 365
                  9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.181953IPR000315B-box-type zinc finger
CDDcd000213.03E-62253No hitNo description
PfamPF006432.0E-52254IPR000315B-box-type zinc finger
PROSITE profilePS5011910.22496143IPR000315B-box-type zinc finger
SMARTSM003362.1E-1296143IPR000315B-box-type zinc finger
PfamPF006431.2E-598142IPR000315B-box-type zinc finger
CDDcd000212.90E-899143No hitNo description
PfamPF062031.0E-17321363IPR010402CCT domain
PROSITE profilePS5101716.906321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MASEGEEKRA VGTAAYWGLS ARPCDSCRGA APAVLYCHVD AAFLCGACDS RIHGGGGGGG  60
GGNPNINYNN TNKEITPLQQ HQQRERQRQR QQRPHERVWL CEVCEQAPAS VTCKADAAAL  120
CDGCDADIHS ANPLARRHHR LPVAPFLGPL SAAPKPFPSS SSSSAAAAGG IIPFEEEEEH  180
EHGHGHGHGH AKEEEEEEEE VEETEAEAAS WLLPEPTAKE ALLPADMVGA VAGEDLFFAD  240
YPYLDLNYAV PPPPQPPILA ADSGFQDAVT DLGAATAAAG SKHSYGAYPD HSLNHSMSSS  300
EAAVVPDATA QGKDRTVQMD REARVMRYRE KRKNRRFEKT IRYASRKAYA ETRPRIKGRF  360
AKRAEVEAEV GKIYSSAAAA VAALMADSDY GVVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6663310.0KM666331.1 Ananas bracteatus clone 51620b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110666.10.0zinc finger protein CONSTANS-LIKE 5-like
TrEMBLA0A199VV870.0A0A199VV87_ANACO; Zinc finger protein CONSTANS-LIKE 5
STRINGXP_008789696.11e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.18e-30CONSTANS-like 5