PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Nin-like
Protein Properties Length: 896aa    MW: 98419.3 Da    PI: 6.2655
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028022.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85.1e-29537588152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+isl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Aco028022.1 537 AEKNISLCVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 588
                  589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052522608IPR003035RWP-RK domain
PfamPF020422.0E-25540588IPR003035RWP-RK domain
SuperFamilySSF542779.16E-22789878No hitNo description
Gene3DG3DSA:3.10.20.2402.5E-22793875No hitNo description
SMARTSM006663.4E-21796878IPR000270PB1 domain
PfamPF005644.6E-17796877IPR000270PB1 domain
PROSITE profilePS5174524.128796878IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MEGFTPLDCG ATESPDLEDP FTFSALMNYD GYSEIYSPAI ADQIFSALTY SAAQDVPAIW  60
PSFASPDSAV QGRDVAIGNA NSSSTAYSGC RDNMGPQKSN SHFGLSANSP FVDTSSVPRT  120
IAGGSLPEKM LTALSLFKKS SGGGILAQVW MPIKQGDNHV LSTCEQPFLL DQILAGYREV  180
SRQFTFSAKE APGMFPGLPG RVFMSGMPEW TSNVLYYDGF EYLRMEYALT HRVRGSLAMP  240
VFDSKEGSCC AVLELVTMSE KPDFDAEMDS VCNALEEVNL RTVKARPLLQ NLTKNQKSAV  300
TEILDILRVV CHAHMLPLAI TWIPISSDAG NSEVFVKANG RQINSDSKNK NMLCIQESAC  360
YVNDLKMQGF LHACAEHRLE KGKGIAGKAL QSNQPFFCSD VKACNIREYP LAHHARKFNL  420
GAAVAIRLRN TYTGDDDYIL EFFLPVNHKS SEEQQLLLNN LSSTMQKLCR SLRTISDAEL  480
AGIDAHEDHI HKGKYDPAVK TPFEDQNIPP DERGGDVQPE KLKSSLMRHA EKKRSLAEKN  540
ISLCVLQQYF SGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKINKVNR SLKKIQKVIN  600
SVQGVEGSLK YDPATGCLVA AVSPTQNPPL KTIAPPSCDS VLAASSRNNE PELSVLKLEH  660
DCSHNNDHEK GEFGLIVENR EESCRTTPPD SGILQYANSG GMSRLPLFSG GALSDSHVTK  720
EIGCPEVPHK IDYNDDGIVE HSNPSSSKID YNDDGIVEHS NPSSSSMTDS SSGSASSHPT  780
FKKKPKSASL NENSPTITVK ALYKNDMVRF KFLLSGSYQQ LLEEIAKRFK LLNGTFQLKY  840
RDDEEEWVIL ASDSDLQECL EVLENIESRR VKVLVRDIPF VVGSSPSSSC LLMEQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080072.10.0protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A199V3R60.0A0A199V3R6_ANACO; Protein NLP2 (Fragment)
STRINGXP_008800674.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]