PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027975.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 304aa MW: 33147.7 Da PI: 6.7223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027975.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	2e-12	86	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l P + + +K + a+i+ A++++k+L+ Aco027975.1 86 QRMTHIAVERNRRRLMNEHLAVLRSLTPDS---YVQKGDQASIVGGAIDFVKELE 137 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.78E-14	84	141	No hit	No description
PROSITE profile	PS50888	14.907	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-17	85	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	86	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-13	86	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-10	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MTLEALPSNE LPAFLIYDTI NAAAAAAAAS SSRLLFNGNG GITEESPLIG GMAAMAEEVA 60 VAAGEGRRKR RRRARSGKSK DDAESQRMTH IAVERNRRRL MNEHLAVLRS LTPDSYVQKG 120 DQASIVGGAI DFVKELEQLL QSLEAQKRTL LQQQQQQQQK GNSDIFPTAC YENDSPPFAQ 180 FFSYPQYAWC HPARDYPSLE IQHRPATVAP SVADIEVSLI ETHANIRILT ARQPGQLLKM 240 VAGIQSLRLT ILHLNVTVLD AIVLYSLSVK VEEGCDVASV DDIAAAVHHI LSLIKAGTNL 300 VDR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	72	RRKRRRR
2	67	71	RKRRR
3	67	74	RKRRRRAR
4	86	97	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662981	3e-40	AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBank	AP014960	3e-40	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	3e-40	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855235	3e-40	CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020080503.1	0.0	transcription factor bHLH96-like isoform X2
Refseq	XP_020084784.1	0.0	transcription factor bHLH96-like isoform X2
Swissprot	Q9C7T4	7e-65	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A2H3ZMK2	1e-114	A0A2H3ZMK2_PHODC; transcription factor bHLH71-like
STRING	XP_008796282.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco027975.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]