PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027966.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 306aa    MW: 33569.1 Da    PI: 5.0918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027966.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-134694255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+++E+rRR +iN++ ++Lr+l+P++    ++K +Ka+ L +++eY+k Lq
  Aco027966.1 46 RSKHSAMEQRRRCKINDR-HTLRDLIPHS----DQKRDKATFLLEVIEYVKFLQ 94
                 899***************.9********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1542106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1944114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4744493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-114694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-144698No hitNo description
SMARTSM003538.9E-115099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MESASRSSED EGDFGRRLSS SSHQELMVKV DGKSGEQKLG TPTTPRSKHS AMEQRRRCKI  60
NDRHTLRDLI PHSDQKRDKA TFLLEVIEYV KFLQEKVQKY ESYPEWNQDN VKLTPWSNNR  120
VPADGISDLS HATRVGPIPG FTFSGKLVDN SMSPTPAMLS NSQNVMESDL TADNVASQPQ  180
SQSQWQRSSC AADCTITSDM AADQEELMID EGTISVSSLY SQNLFAALTH AMESSGIDLS  240
QATVSVQVNL GKRASCGRPT SGTTLSNTKD HIDAPPANQT MEDFPMATGG EEPEEPSKRH  300
KVDNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109857.10.0transcription factor BIM2-like isoform X1
SwissprotQ9CAA47e-62BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A199ULS90.0A0A199ULS9_ANACO; Transcription factor BIM2
STRINGXP_008797597.11e-128(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-61BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]