PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco027904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 22953.6 Da PI: 7.4322 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.8 | 2.1e-44 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+ ++ Aco027904.1 15 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFINVHKVFGASNVTKLLNELLPHQREDAVNSLAYEAEARVKDPVYGCVGAISVLQRQVQRLQKELEIAH 112 7*********************************************************************************************9998 PP DUF260 99 ee 100 + Aco027904.1 113 AD 114 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.484 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-44 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSSSSSSSSS TSNSPCAACK FLRRKCMPGC IFAPYFPPEE PQKFINVHKV FGASNVTKLL 60 NELLPHQRED AVNSLAYEAE ARVKDPVYGC VGAISVLQRQ VQRLQKELEI AHADLLRYAC 120 GEIPTGHLQQ PQSAQRLGSL YQRSGEYGRR VGNGGGVGGP LFNQGYGVVA SHVPNYPATA 180 TATTTPWCTS ANPSGEGSIS SGDHMDQSEG GESSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-71 | 5 | 126 | 1 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-71 | 5 | 126 | 1 | 125 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020082802.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020082803.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020097724.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020097726.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020097727.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020104942.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020104943.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020104944.1 | 1e-160 | LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 1e-68 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2H3ZTC7 | 2e-89 | A0A2H3ZTC7_PHODC; LOW QUALITY PROTEIN: LOB domain-containing protein 25-like | ||||
STRING | XP_008795982.1 | 3e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-66 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco027904.1 |
Publications ? help Back to Top | |||
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