PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027746.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 584aa MW: 63909.3 Da PI: 4.8191

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027746.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	79.7	4.5e-25	30	88	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d++++ ++sw +++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y Aco027746.1 30 FLSKTYDMVDDPATDAIVSWGRENNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTY 88 9******************999********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.0E-50	26	194	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.8E-34	27	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.81E-23	28	88	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.4E-13	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.4E-27	30	194	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-13	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-13	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.8E-34	162	194	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MGRGGGGAAA SASAAAGPNP SLNGNAPPPF LSKTYDMVDD PATDAIVSWG RENNSFVVWN 60 TPEFARDLLP KYFKHNNFSS FVRQLNTYLQ PARTVLWGDT RYNPVMSTPE HIARGEATTL 120 EQGLKSGTGL PDLGPVPESF SRGLRRLRAM RPVSLNGTGL WGPGFRKVDP DRWEFANESF 180 LRGQKHLLKT INRRKSSHPH NETPQPKSQT AACVEVGKFG LEEEIERLKR DKNILMQELV 240 RLRQQQQATD QQLHTLGNRL QGMEQRQQQM MSFLAKAMQS PGFLAQFMQQ NDSNKRIAAA 300 SKKRRLPKQE AGLDAGSNSP DGQIVKYQPM INEAAKAMLR QILKLDGSSP PRLEQLSNSD 360 NFSLENFMPP SEATTFDSTS SNRNSGVTLA EVPSGLSVPY VTASTGFSAI CSSSAASEIQ 420 SPIGLSDNKN SSEELRDMDV LSSVPETIPS PSPTDMSVPE FSELQDIVSE DSVVNIPGES 480 FVGAYINPIA EVEADNAVPI ETDDILYGDD EQKLPGIIDT FWEQFLASSP ISSEAVEEVE 540 LSGQEGKAVM QQRPQNSNNG WDSARNMENL TEQMGLLSSD RKG*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MGRGGGGAAA SASAAAGPNP SLNGNAPPPF LSKTYDMVDD PATDAIVSWG RENNSFVVWN  60
TPEFARDLLP KYFKHNNFSS FVRQLNTYLQ PARTVLWGDT RYNPVMSTPE HIARGEATTL  120
EQGLKSGTGL PDLGPVPESF SRGLRRLRAM RPVSLNGTGL WGPGFRKVDP DRWEFANESF  180
LRGQKHLLKT INRRKSSHPH NETPQPKSQT AACVEVGKFG LEEEIERLKR DKNILMQELV  240
RLRQQQQATD QQLHTLGNRL QGMEQRQQQM MSFLAKAMQS PGFLAQFMQQ NDSNKRIAAA  300
SKKRRLPKQE AGLDAGSNSP DGQIVKYQPM INEAAKAMLR QILKLDGSSP PRLEQLSNSD  360
NFSLENFMPP SEATTFDSTS SNRNSGVTLA EVPSGLSVPY VTASTGFSAI CSSSAASEIQ  420
SPIGLSDNKN SSEELRDMDV LSSVPETIPS PSPTDMSVPE FSELQDIVSE DSVVNIPGES  480
FVGAYINPIA EVEADNAVPI ETDDILYGDD EQKLPGIIDT FWEQFLASSP ISSEAVEEVE  540
LSGQEGKAVM QQRPQNSNNG WDSARNMENL TEQMGLLSSD RKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-18	1	88	3	87	Heat shock factor protein 1
5d5v_B	4e-18	1	88	3	87	Heat shock factor protein 1
5d5v_D	4e-18	1	88	3	87	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665309	1e-59	KM665309.1 Ananas bracteatus clone 50408b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089587.1	0.0	heat stress transcription factor A-1-like isoform X1
Swissprot	Q84T61	1e-168	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A199UEJ3	0.0	A0A199UEJ3_ANACO; Heat stress transcription factor A-1 (Fragment)
STRING	TRIUR3_08676-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	9e-85	heat shock transcription factor A1D

Link Out ? help Back to Top
Phytozome	Aco027746.1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]