PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027680.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 391aa MW: 40941.1 Da PI: 4.4052

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.6	5.3e-35	42	132	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++ll++i+ Aco027680.1 42 FLTKTYQLVDDPAVDDVISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLCDIH 129 9***************************************************************99.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Aco027680.1 130 RRK 132 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.0E-37	33	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-58	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.71E-35	39	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-31	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGGGGGGGAA AMAPPPVGEQ AGDTTSAAAA AAGGQRSLPT PFLTKTYQLV DDPAVDDVIS 60 WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG 120 ERRLLCDIHR RKITPPAAGA AAPSAAQVTV AAAIPVAVPV THTGSPTISG EEQVLSSNSS 180 PGAPPPPPPP PLTAASAPST SGSGGAGDLH EENERLRGEN SRLSRELGQM KNLCNNILLL 240 MSKYAASQQP GSDSSSPAPP PPEAAPMLEL MPSSAAAAAA AAAAALEEEE EEEEEEAVDE 300 AEEEEDPVKA EEEGTPSPRL FGVSIGIKRS REDDGEDPPP PAMAEVKSEP PDPQEGPGAH 360 QSWPIYRPRA IHHSQRSSAT SSNGPDRDGQ *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGGGGGGGAA AMAPPPVGEQ AGDTTSAAAA AAGGQRSLPT PFLTKTYQLV DDPAVDDVIS  60
WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG  120
ERRLLCDIHR RKITPPAAGA AAPSAAQVTV AAAIPVAVPV THTGSPTISG EEQVLSSNSS  180
PGAPPPPPPP PLTAASAPST SGSGGAGDLH EENERLRGEN SRLSRELGQM KNLCNNILLL  240
MSKYAASQQP GSDSSSPAPP PPEAAPMLEL MPSSAAAAAA AAAAALEEEE EEEEEEAVDE  300
AEEEEDPVKA EEEGTPSPRL FGVSIGIKRS REDDGEDPPP PAMAEVKSEP PDPQEGPGAH  360
QSWPIYRPRA IHHSQRSSAT SSNGPDRDGQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-26	42	134	29	131	Heat shock factor protein 1
5d5v_B	6e-26	42	134	29	131	Heat shock factor protein 1
5d5v_D	6e-26	42	134	29	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00432	DAP	Transfer from AT4G11660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098629	1e-118	FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081852.1	0.0	heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	1e-114	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A199UR20	0.0	A0A199UR20_ANACO; Heat stress transcription factor B-2b
STRING	OB08G29340.1	1e-124	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-68	HSF family protein

Link Out ? help Back to Top
Phytozome	Aco027680.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]