PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco027420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 25238.5 Da PI: 6.3075 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 94 | 148 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keql Le+ F+ ++++ +++eLA++l+L rqV vWFqNrRa+ k Aco027420.1 94 RKKLRLSKEQLALLEDSFRAHNTLYPVQKQELAQQLNLRPRQVEVWFQNRRARCK 148 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2.1e-40 | 94 | 184 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++lLE+sF+++++L p +K+ela++L+l+prqv+vWFqnrRAR k+kq+E+d+e+Lkr++++l++en+rL++e eLr+++ Aco027420.1 94 RKKLRLSKEQLALLEDSFRAHNTLYPVQKQELAQQLNLRPRQVEVWFQNRRARCKLKQTEVDCEYLKRCCESLTDENHRLKRELMELRSAM 184 69**************************************************************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 74 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-19 | 84 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 92 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.03E-15 | 94 | 151 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 94 | 148 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.1E-18 | 150 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.8E-11 | 150 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGEEECNIAL SLAIGGCAGE FTSSRSCSAK PPVLFHILFP SQKREEGQQR EEEEEEEEEE 60 EKKGEEDGGW IERKRSKSED SSKGASDANG GGARKKLRLS KEQLALLEDS FRAHNTLYPV 120 QKQELAQQLN LRPRQVEVWF QNRRARCKLK QTEVDCEYLK RCCESLTDEN HRLKRELMEL 180 RSAMPAVSLP FNVPIPRAVA ALRMCPSCER IATDRDEKRK A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARCKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020090360.1 | 1e-105 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 4e-52 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A199UQP6 | 1e-159 | A0A199UQP6_ANACO; Homeobox-leucine zipper protein HAT14 | ||||
STRING | XP_008789723.1 | 3e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-54 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Aco027420.1 |