PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco027352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 371aa MW: 39619.5 Da PI: 8.3019 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.6 | 4.5e-34 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y+++++++++ +i w +++nsfvv+d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll++i Aco027352.1 46 FVVKTYRMVNEPSTDAVIAWGKENNSFVVVDPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLRQIA 133 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r++s Aco027352.1 134 RRNS 137 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.1E-52 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.71E-33 | 43 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 43 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-17 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-29 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
DTTISMMTMM MEEDGSKNKN KNNNDHMMMI RGYRGGGGGA LAAAPFVVKT YRMVNEPSTD 60 AVIAWGKENN SFVVVDPFVF SQTLLPAHFK HNNFSSFVRQ LNTYGFRKVD PDRWEFAHAS 120 FLRGQTHLLR QIARRNSGGG GGGGGSNSSS SACCSSSSSS SSTTTSTGWG VNGKKKKKMM 180 MTTTMEEGDE AAVAEEVVRL KQEQKAIEER VARMWRRVQE TERRPRQMLE FLFKLVGDPQ 240 LLPRLIVGPG PTPPPPPPPA AAPATATAAV PECGGGGGGE KRARRLRELE ADREARPGVA 300 GLCSWPLDSE GAAAGGFYDR RGEDELISAV DQPVGFLYGG DGGDYGGVVD GGGSSGGGFY 360 PYAFPVGNGY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 2e-24 | 46 | 135 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-24 | 46 | 135 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-24 | 46 | 135 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-24 | 46 | 135 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-24 | 46 | 135 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 178 | GKKKKKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248538 | 3e-83 | AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence. | |||
GenBank | AK354435 | 3e-83 | AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06. | |||
GenBank | AK358136 | 3e-83 | AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14. | |||
GenBank | AK370399 | 3e-83 | AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13. | |||
GenBank | HM446041 | 3e-83 | HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087693.1 | 0.0 | heat stress transcription factor C-2b-like | ||||
Swissprot | Q6EUG4 | 5e-80 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | A0A199W3V9 | 1e-135 | A0A199W3V9_ANACO; Heat stress transcription factor C-2a | ||||
STRING | GRMZM2G105348_P01 | 1e-82 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-57 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Aco027352.1 |
Publications ? help Back to Top | |||
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