PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco026511.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 358aa MW: 39885.1 Da PI: 7.951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco026511.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.3e-05	235	277	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++ RR+ri +++ L+ +lP + kK +K + ++Y+k L Aco026511.1 235 ANDKLRRARISEGIKALQNCLPYS-----KKRNKESAFDDLIDYVKFL 277 7899******************98.....7888887777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.43E-4	226	282	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-7	227	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-9	227	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.172	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-4	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MHAFGGTRRS SKAESDMPKR LETSSVEPVR EPYRDVPVNL ITAPRNDMPT LQNIWACQKS 60 FLNVCGNDAD MLFPGPFSSS TRILHANPQA INRLHDVRGF FELKDGHFDD SKFSSNPLRK 120 VSGNSSLADI GASGVKSLGP IISSRITSTA SGSSKAVDSV ECRTHIEVYN LPMITHSMLD 180 AEEQTGRMSS NGENQNFNQS YALMKPKSNE HYFNLAEADC KEIVRSSKSK NKSVANDKLR 240 RARISEGIKA LQNCLPYSKK RNKESAFDDL IDYVKFLKLQ LKVLSESRLD GEETDHRFVH 300 VEGYGHYLLH PQMSAEPLGE MMGQLMESNM QVANQLLESK GIALFPLEFA YTLLRSS*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MHAFGGTRRS SKAESDMPKR LETSSVEPVR EPYRDVPVNL ITAPRNDMPT LQNIWACQKS  60
FLNVCGNDAD MLFPGPFSSS TRILHANPQA INRLHDVRGF FELKDGHFDD SKFSSNPLRK  120
VSGNSSLADI GASGVKSLGP IISSRITSTA SGSSKAVDSV ECRTHIEVYN LPMITHSMLD  180
AEEQTGRMSS NGENQNFNQS YALMKPKSNE HYFNLAEADC KEIVRSSKSK NKSVANDKLR  240
RARISEGIKA LQNCLPYSKK RNKESAFDDL IDYVKFLKLQ LKVLSESRLD GEETDHRFVH  300
VEGYGHYLLH PQMSAEPLGE MMGQLMESNM QVANQLLESK GIALFPLEFA YTLLRSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108509.1	0.0	uncharacterized protein LOC109724187 isoform X2
TrEMBL	A0A199W3E5	0.0	A0A199W3E5_ANACO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25051	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-20	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Aco026511.1