PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026499.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 412aa    MW: 44311.6 Da    PI: 5.1517
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026499.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-074790542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C ++++++++  C + +  lC+ C  ++H g      H+++p+
  Aco026499.1 47 LCGRCNSQPAIVRCIEENISLCRGCDWSGHGGsasalgHKMQPI 90
                 7*****************************66999999*99986 PP
2CCT66.11e-22354397144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R+ a++RYkeK+k+R+FeKkirYesRK++A++R RvKGrFvk+ 
  Aco026499.1 354 RDSAVMRYKEKKKNRRFEKKIRYESRKVRADTRRRVKGRFVKAG 397
                  899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.902147IPR000315B-box-type zinc finger
SMARTSM003365.2E-5147IPR000315B-box-type zinc finger
CDDcd000216.08E-5435No hitNo description
PROSITE profilePS501199.4714390IPR000315B-box-type zinc finger
PROSITE profilePS5101715.606354396IPR010402CCT domain
PfamPF062033.2E-17354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGLLCDFCGK QRSMIYCRPD AACLCLSCDR GVHAANALSC RHLRTLLCGR CNSQPAIVRC  60
IEENISLCRG CDWSGHGGSA SALGHKMQPI NSYSGCPSSA ELSRLWSFAL EIPPILDSNC  120
QKVLGMISVG TNSFDNCCGP SNGRDNDLGA NGELSTSVGS SLKFVENPLP FTSDQQARLI  180
DPTTPKLCCT ETNGHETCKD DHLYEDLNVD DIDLSFENYE ELFGGSQNES GQLFGDAGMD  240
SLFEMDISAT TSNCQGALMA EASSSGQVES THAACSTAAS ADSLMSNPGV DSDPIPCFPS  300
MQACSALSLS FSGLISDSKR GDYRDCGMSS MATVGDPPWY AAGPEASSFS PASRDSAVMR  360
YKEKKKNRRF EKKIRYESRK VRADTRRRVK GRFVKAGDAY DYDPLHDAKG C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109419.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_020109420.10.0zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A199USQ90.0A0A199USQ9_ANACO; Zinc finger protein CONSTANS-LIKE 9
STRINGXP_008801879.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-89CONSTANS-like 9