PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025804.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 278aa    MW: 32509 Da    PI: 10.3277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025804.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-1915105198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkvl+p +    + l++p++fa+++ +++   ++ tl+++ g+ W v+l  ++ s+ +++++GW+eFv+a+++++g  vvF+++g++ f  + kvf+
  Aco025804.1  15 FFKVLLPGSF---DKLWIPRSFADHY-INE-DCRKATLYSPLGKFWHVNLERSNESNDVFFGGGWREFVRAHDIRVGYLVVFRHEGNMIF--TTKVFD 105
                  6677744333...3489******777.343.4569***************99999999**************************999999..777765 PP
2B359.27.1e-19186276198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k+  ++++l ++++ +p +f+   g++   ++ ++l+d++ rsW v +   ++++   l+kGW+eF++ n+LkegD + F+l++  ++e++v+++r
  Aco025804.1 186 FEKTV-RPYNLVRKCMNVPETFCMLSGLQ--DKTVIKLRDSRHRSWPVSF--HRYPQFAQLRKGWEEFCEGNNLKEGDKCFFRLVS--KKEMHVRIVR 276
                  55555.777777778********777888..4568***************..*******************************975..7778999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-247109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-269112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.71912107IPR003340B3 DNA binding domain
CDDcd100171.25E-2113105No hitNo description
SMARTSM010197.6E-1815107IPR003340B3 DNA binding domain
PfamPF023622.8E-1615104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-24180276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-22180276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-15184276No hitNo description
PROSITE profilePS5086313.549185277IPR003340B3 DNA binding domain
SMARTSM010191.1E-12186277IPR003340B3 DNA binding domain
PfamPF023628.0E-16186276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASGRSSNNP KRPQFFKVLL PGSFDKLWIP RSFADHYINE DCRKATLYSP LGKFWHVNLE  60
RSNESNDVFF GGGWREFVRA HDIRVGYLVV FRHEGNMIFT TKVFDLSGCL KAYDETTLNH  120
AGQVLTDIDD GNINVTTNNH SERARRYNFK KRGSYKPISP TPNQLFPHYK NKLRNHSHLT  180
NSSPQFEKTV RPYNLVRKCM NVPETFCMLS GLQDKTVIKL RDSRHRSWPV SFHRYPQFAQ  240
LRKGWEEFCE GNNLKEGDKC FFRLVSKKEM HVRIVRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102764.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A199VV960.0A0A199VV96_ANACO; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-25B3 family protein