PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco025712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29286 Da PI: 7.7631 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ll +++ +G g+W++ ++ g++R++k+c++rw++yl Aco025712.1 14 RGAWTSHEDKLLSEYIMAHGLGRWRSLPADAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.9e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl Aco025712.1 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.947 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.794 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRKACCPKE GLNRGAWTSH EDKLLSEYIM AHGLGRWRSL PADAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT YLRKKVFGGD 120 GESSPKAKKR SSAKHNTESS DDSSVNIVRT KAVRCTRSHF ADLAPNQILD QDVGGFCTVD 180 NNMQNLLFPQ TPTESSYVSY DSFENNYGVI DIDPLTIKDI SGCMRQEEDE ELFSLIDNDV 240 WDLLELPNKK YKLQRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020082728.1 | 0.0 | myb-related protein 308-like | ||||
Refseq | XP_020114552.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q9FJA2 | 8e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A199V1S2 | 0.0 | A0A199V1S2_ANACO; Transcription factor TT2 | ||||
STRING | GSMUA_Achr3P27700_001 | 1e-89 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-61 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco025712.1 |