PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025308.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 518aa    MW: 57821 Da    PI: 6.2859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025308.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-18174220148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+q+G + W+ Ia++++  R +kqc++rw+++l
      Aco025308.1 174 KGQWTLEEDRRLIKLVEQHGLRKWSHIAQMLP-ARIGKQCRERWHNHL 220
                      799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-17226268145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+
      Aco025308.1 226 KDTWSEEEDRILIEAHMEVGNK-WAEIAKRLP-GRTENSIKNHWN 268
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.911169224IPR017930Myb domain
SuperFamilySSF466893.59E-31171267IPR009057Homeodomain-like
SMARTSM007171.5E-15173222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-27175227IPR009057Homeodomain-like
CDDcd001671.07E-15177220No hitNo description
PfamPF139216.5E-19177234No hitNo description
PROSITE profilePS5129421.479225275IPR017930Myb domain
SMARTSM007176.9E-18225273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-22228273IPR009057Homeodomain-like
CDDcd001672.58E-14228271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDFGCFKANM EDELPLHLDG CNFGRSGIHP DFPDPFDAIA SARYPFAAAA AAVGDCFSNK  60
ILPPPVAIDM AEGTDAKSNI VESFPNTNIM DRLPHYTQGA IRDHMESPHH HHISHQPLPA  120
VCSAEPLAAF TPPDELSCVT GSSRPLLRGF EMNKKSAAGK KTSGKHHKKP NVVKGQWTLE  180
EDRRLIKLVE QHGLRKWSHI AQMLPARIGK QCRERWHNHL RPNIKKDTWS EEEDRILIEA  240
HMEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS RSTKNPKSGT LLQDYIKSLG  300
LKPPLPRPAG TGTTTATPPS ALSPSTANYN KNKKIPERAF DELIVPPPQR SLAMSMMPAE  360
AEADVKGPAH SRYAGRAEDQ DRLVPTCEVD FADVSDLLFD EKELLCDQKC ADMEMRYVLD  420
HLDCNKVLDM EMEMEMEMEM EMGMDMDMDM AEMEMAWSGD HDGGDMAAPP VHDVLMTTMM  480
MGAAAGEDQK EAVAVKKEMD LVEMISHSCR SANPVIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-4617027454158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-4617027454158MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089070.10.0transcription factor MYB98-like
TrEMBLA0A199UEM70.0A0A199UEM7_ANACO; Transcription factor MYB98
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-60myb domain protein 98