PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024796.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 293aa    MW: 32782.3 Da    PI: 9.2016
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024796.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.75.2e-07140192155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr...krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  g   A+   +         ++++lg f+++ eAa+a+++a+ + +g
  Aco024796.1 140 SKYRGVTLYK-CGLRQARMGQFL----EallRYIYLGLFDSEIEAARAYDKAAIRCNG 192
                  7899999888.577677744432....2356**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.20E-19140202No hitNo description
SuperFamilySSF541712.75E-10140202IPR016177DNA-binding domain
SMARTSM003808.6E-20141206IPR001471AP2/ERF domain
PROSITE profilePS5103213.05141200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-10166200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGISYMEVLT LLMLQQDNIY LCTGAVARRE PPPPRLPPRT AHTPLQLGRG ERHPSLLFAA  60
TLCGSSLLKN RRNFLFDDAD EVFVHRAYDR AAIKFPGVDV DINFNLSDYD DNLKQMRNLT  120
KEEFVHILRR QSTGFARGSS KYRGVTLYKC GLRQARMGQF LEALLRYIYL GLFDSEIEAA  180
RAYDKAAIRC NGREAVTNFE PSFYEGEILP EPENEVSTKS PLSPYHQSSI LRYPVSPYAQ  240
APGPTPTILS SPGKSFPSSP ANHIVIGSGS PTSHRVLRKL YEKLQKNGES NV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082989.11e-151floral homeotic protein APETALA 2-like isoform X1
TrEMBLA0A199V7T61e-148A0A199V7T6_ANACO; Floral homeotic protein APETALA 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-60AP2 family protein