PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco024560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 181aa MW: 20411.6 Da PI: 5.3784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 1.9e-08 | 12 | 55 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ Ed+l+ +a ++ g +W+++a +++ gRt+ ++ ++ Aco024560.1 12 WSRTEDKLFENALVIFPEGtanRWALVAGHVP-GRTPREVWAHYC 55 ********************************.*****9988886 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G+g+W+ I+r k+Rt+ q+ s+ qky Aco024560.1 114 PWTEEEHRLFLEGLAKYGKGDWRNISRWAVKTRTPTQVASHAQKY 158 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.252 | 1 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-6 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-12 | 10 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.82E-6 | 12 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-5 | 12 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-7 | 12 | 56 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.347 | 107 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-18 | 109 | 163 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-17 | 110 | 162 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.4E-11 | 111 | 161 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-12 | 113 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-12 | 114 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.00E-11 | 114 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MEFFGEPAGP GWSRTEDKLF ENALVIFPEG TANRWALVAG HVPGRTPREV WAHYCELVQD 60 VEMIEQGRVE VPVYGDGDDD DDYDGGEAEP SGSDRTAQVG GSRARAEERK RGVPWTEEEH 120 RLFLEGLAKY GKGDWRNISR WAVKTRTPTQ VASHAQKYFI RQNQNARESK RKSIHDITIP 180 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-14 | 8 | 74 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK367954 | 5e-53 | AK367954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065H11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087431.1 | 1e-132 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-51 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A199UUT9 | 1e-115 | A0A199UUT9_ANACO; Transcription factor DIVARICATA | ||||
STRING | XP_008808839.1 | 9e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 5e-53 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco024560.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|