PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024437.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 767aa    MW: 81198.8 Da    PI: 5.5181
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024437.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.8e-131181663787
     trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  k+ e g++rs+k+Ckek+en++k+yk++ke++ +r++++s  +++f+qlea
  Aco024437.1 118 KLGELGYRRSAKKCKEKFENVHKYYKRTKENRAGRQDGKS--YRFFSQLEA 166
                  67899*****************************866665..*******85 PP
2trihelix103.81.3e-32479564187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r+ ++ +++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Aco024437.1 479 RWPKAEVHALINLRSGLDIKYQEAGPKGPLWEEISGEMKKLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 564
                  8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071732101141IPR001005SANT/Myb domain
CDDcd122038.37E-15103146No hitNo description
PfamPF138372.4E-8118167No hitNo description
PROSITE profilePS500907.294472536IPR017877Myb-like domain
SMARTSM007170.19476538IPR001005SANT/Myb domain
CDDcd122036.41E-29478543No hitNo description
PfamPF138371.8E-22478565No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MQQQGGSPYG VPPPEMAPFP SPTAPGPGPR PHILGIPPAA DQQMPEAASP ISSRPPPPAA  60
AGAPRSAGGG FEELVSGAGG GGFPDDEALA GASDEAERGG AGNRWPKQET LALIKIRKLG  120
ELGYRRSAKK CKEKFENVHK YYKRTKENRA GRQDGKSYRF FSQLEALGAS SSSGSPAPTT  180
IGFAAGAAAM AGPSAAQIQP AHISAAAPPP PIVTPVRAAT ELGHGGTIQG ISGSTTPTTP  240
AAAPVGGISF STNSSSSESD DTLEDEETEE TGGQPHEHGS KRKRKGGSGG GGGGGSRKMM  300
AFFDGLMKQM VERQEALQQR FLETIEKQEQ DRMIREEAWR RQEMARLTRE QELMAQERAM  360
AASRDAAVLS FIQKISGQTI QLPTVPATPI SAAPAPAPAP APMPQPQRQT RQSPPPPPPP  420
QPVPPQPQTQ PQREFRQKQQ STEIVLHQAS TSSHELVPVP DPQELAPGGA GFETVSSSRW  480
PKAEVHALIN LRSGLDIKYQ EAGPKGPLWE EISGEMKKLG YNRSSKRCKE KWENINKYFK  540
KVKESNKKRP EDSKTCPYFH QLDALYRRKQ QGIGGGGGSS SSGHRSGDQE AYSHSNPQGQ  600
GNVLSIMPPP PPPPPPPSSQ PPPLEAEIKT DGGKKNGGSS DGNGGGSGGL QIQTSNGGLT  660
PTLFEEGPTK KPEDIVKELM ERRDAADDCD EADDSFNMDG QDDDEDDDEE EDDDDEEGSK  720
MRYEIQFQRP SNVSGGGGGN SSTAAAAATN TTTTTTTTGS FLAMVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6652040.0KM665204.1 Ananas bracteatus clone 50297d microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085556.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A199V9Y80.0A0A199V9Y8_ANACO; Trihelix transcription factor GT-2
STRINGXP_008791630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-48Trihelix family protein