PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco024331.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 327aa MW: 37764.7 Da PI: 10.6393

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco024331.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	76.6	3.2e-24	106	148	2	44
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG 44 +e alk prCdstntkfCy+nnys+sqP yfCk+CrryW +G Aco024331.1 106 PEPALKSPRCDSTNTKFCYFNNYSISQPLYFCKTCRRYWIRGD 148 677899**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	89	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-19	109	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	18.482	110	164	IPR003851	Zinc finger, Dof-type
Pfam	PF13456	2.7E-6	246	313	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MIRFPQRGVV LLSTLRRQPG RTTPNPSWTP LPSSGAWRSP RAAALFVFFI WYYEMFNSIK 60 TYRQMLKSLI VRQDLRLHHA LRPRAWQLRP AALPGLARWL AKIPQPEPAL KSPRCDSTNT 120 KFCYFNNYSI SQPLYFCKTC RRYWIRGDTP TSPEGSIPLT YLGIKLGFGK QLLRDYDDFD 180 AKVDSRLASW KRNSLSQAGR LEWIDEGKKL AVVQQQFLRA LIANTFWQIW KERNARQYSN 240 NSSSIQIEAN SALEAQAKAM EEAIAEAHQH GIQRVYLESD SSLLIMCLQQ AQSPPWPLRA 300 LLLGIFSTMK KFAATKYFLL KERQTW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	6e-32	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137698	6e-32	AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBank	AP014959	6e-32	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	6e-32	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-23	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco024331.1