PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024127.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27242.5 Da    PI: 5.7895
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024127.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-193790356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++f+++q++ Le+ Fe + ++  +++++LA  lgL+ rqV +WFqN+Ra++k
  Aco024127.1 37 KKRRFSEQQVRSLETTFEVQAKLEPKKKAQLALDLGLQPRQVAIWFQNKRARWK 90
                 6679*************************************************9 PP
2HD-ZIP_I/II115.82.5e-3737128293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrr+s++qv++LE++Fe + kLep++K++la +Lglqprqva+WFqn+RAR+k+kqlE++++aL++ +dal +  e+L++e++ L ++l++
  Aco024127.1  37 KKRRFSEQQVRSLETTFEVQAKLEPKKKAQLALDLGLQPRQVAIWFQNKRARWKSKQLEHEFAALRADHDALFAAVEALRREKQILLRQLQK 128
                  9*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.63E-182594IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-182793IPR009057Homeodomain-like
PROSITE profilePS5007116.9413292IPR001356Homeobox domain
SMARTSM003892.5E-163596IPR001356Homeobox domain
CDDcd000866.25E-153793No hitNo description
PfamPF000464.0E-163790IPR001356Homeobox domain
PRINTSPR000311.5E-56372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000311.5E-57288IPR000047Helix-turn-helix motif
PfamPF021832.1E-1192133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAHSGELFLG EAAGVADPFA SMNGFAGKRG RRGESTKKRR FSEQQVRSLE TTFEVQAKLE  60
PKKKAQLALD LGLQPRQVAI WFQNKRARWK SKQLEHEFAA LRADHDALFA AVEALRREKQ  120
ILLRQLQKLK ELLEKQTEEN EKDGGSSNGG NRAIAASREG SANENVLNSE HGEIKLSCVA  180
QEEDAGLLYM GEPEVSGCLT SIGEQQQQQC GFNCSSSPEN CTTTTTTTTS EWWEFWPLTE  240
LNPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083619.11e-180homeobox-leucine zipper protein HOX24-like
TrEMBLA0A199V9S31e-179A0A199V9S3_ANACO; Homeobox-leucine zipper protein HOX6
STRINGXP_008791625.14e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.26e-31homeobox 7