PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco023887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | FAR1 | ||||||||
Protein Properties | Length: 70aa MW: 7705.19 Da PI: 11.8785 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.6 | 1.1e-09 | 16 | 56 | 50 | 90 |
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ + ++++ +gCka+l+vk+++dg+w+v ++ +Hn +l+ Aco023887.1 16 KRIKGHQTNICGCKAHLRVKRTNDGNWKVVAFVRKHNSALV 56 5566778889***************************8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-7 | 16 | 56 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MFVLKKGNPN QKFGIKRIKG HQTNICGCKA HLRVKRTNDG NWKVVAFVRK HNSALVASPS 60 KAVFFGLIV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A199UGW5 | 7e-40 | A0A199UGW5_ANACO; Protein FAR1-RELATED SEQUENCE 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 1e-07 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Aco023887.1 |