PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023820.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 388aa    MW: 41534.1 Da    PI: 5.601
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-072253434
     zf-B_box  4 rkCpeHee.kelqlfCedCqqllCedClleeH 34
                 r C+ +    ++ l+C+ +  +lC  C + +H
  Aco023820.1 22 RPCDSCRGaAPAVLYCRVDAAFLCGACDSRIH 53
                 78*****8688*******************99 PP
2zf-B_box23.11.5e-0792134339
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                   + C+ +e+ +++  C+ +   lC+ C   +H+       H +
  Aco023820.1  92 VWLCEVCEQAPASVTCKADAAALCDGCDADIHSAnplarrHHR 134
                  689*****************************65788888655 PP
3CCT69.39.7e-24312356145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  Aco023820.1 312 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRAE 356
                  9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.11953IPR000315B-box-type zinc finger
PROSITE profilePS501198.5321974IPR000315B-box-type zinc finger
PfamPF006432.3E-52254IPR000315B-box-type zinc finger
CDDcd000211.52E-62253No hitNo description
SMARTSM003362.1E-1290137IPR000315B-box-type zinc finger
PROSITE profilePS5011910.22490137IPR000315B-box-type zinc finger
PfamPF006431.2E-592136IPR000315B-box-type zinc finger
CDDcd000212.83E-893137No hitNo description
PfamPF062039.7E-18312354IPR010402CCT domain
PROSITE profilePS5101716.906312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASEGEEKRG AGTAAYWGLS ARPCDSCRGA APAVLYCRVD AAFLCGACDS RIHGGGGGNP  60
NTNYNNTNKE ITPLQQHQQR GRQRQQRPHE RVWLCEVCEQ APASVTCKAD AAALCDGCDA  120
DIHSANPLAR RHHRLPVAPF LGPLSAAPKP FPSSSSSSSA AAAGGIIPFE EEEEHEHGHG  180
HAKEEEEGEE EVEETEAEAA SWLLPEPTAK EALLPADMVG AVAGEDLFFA DYPYLDLNYA  240
VPPPPQPPIL AADSGFQDAV TDLGAATAAA GSKHSYGAYP DHSLNHSMSS SEAAVVPDAT  300
AQGKDRTVQM DREARVMRYR EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRAEVEAE  360
VGKIYSSAAA AVAALMADSD YGVVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6663310.0KM666331.1 Ananas bracteatus clone 51620b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110378.10.0zinc finger protein HD1-like
TrEMBLA0A199VV870.0A0A199VV87_ANACO; Zinc finger protein CONSTANS-LIKE 5
STRINGXP_008789696.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.17e-41CONSTANS-like 2