PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023559.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 271aa    MW: 31052.3 Da    PI: 8.8706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023559.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.4e-1321981698
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 l +p   a+  ++++++  t tl ++ g+ W + l  +  ++ + +++GW+eF +a++  +gDf++F+++g++ f  +vkvf+
  Aco023559.1 21 LPIPDAIAQLLMHQHNG--TATLFSPLGKFWHIALEKDADDN-THFSNGWREFSRAHDFTAGDFLLFRYEGNMVF--KVKVFD 98
                 55666666444666444..89999***********5555554.55899***************************..999998 PP
2B345.41.5e-142032632185
                  HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  +fa+++ +   ++ +++led++ rsW vkl  + + +   l +GWkeF   n+L+egD ++F+l+
  Aco023559.1 203 SFARSNRLT--RKEEMVLEDPKRRSWHVKL--WHGVSDSRLLSGWKEFSAVNKLEEGDKCTFQLV 263
                  799999877..4458***************..66655656777*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-213102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9436100IPR003340B3 DNA binding domain
CDDcd100171.18E-16798No hitNo description
SMARTSM010197.7E-119100IPR003340B3 DNA binding domain
PfamPF023627.1E-102098IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-15177263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-17177263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-15179263No hitNo description
SMARTSM010190.0054181269IPR003340B3 DNA binding domain
PfamPF023622.8E-12202263IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773203270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGSHNKPQFV KVLLPEFLEK LPIPDAIAQL LMHQHNGTAT LFSPLGKFWH IALEKDADDN  60
THFSNGWREF SRAHDFTAGD FLLFRYEGNM VFKVKVFDVT GCRKQYDRAI SEKRSFGAKD  120
EILEDVCDGM CNSDDWQNLS TGRRKRGKPT APKEQLQTPP GFLATDKSAT KNNRARTVPH  180
FEKIIRPYNF SCGHMVSSAC RGSFARSNRL TRKEEMVLED PKRRSWHVKL WHGVSDSRLL  240
SGWKEFSAVN KLEEGDKCTF QLVLTEYCEF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103554.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A199UHD81e-179A0A199UHD8_ANACO; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-20B3 family protein