PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023481.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 393aa    MW: 43035.7 Da    PI: 8.7985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023481.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53191471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  lppGfrFhPtdeelvv+yLk+k+++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++  +
  Aco023481.1  19 LPPGFRFHPTDEELVVHYLKRKATSSPLPV-TIIAEVDLYKFDPWELPGKATYGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTTggT 115
                  79****************************.89***************8888899***************************************9777 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Aco023481.1 116 RQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 147
                  788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6313194IPR003441NAC domain
PROSITE profilePS5100561.04319194IPR003441NAC domain
PfamPF023653.1E-2820147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MESTDSSSGS QQQLQQPQLP PGFRFHPTDE ELVVHYLKRK ATSSPLPVTI IAEVDLYKFD  60
PWELPGKATY GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIL TTGGTRQKVG  120
VKKALVFYGG KPPKGIKTNW IMHEYRLADS SPSSSASTTS FRPPNNNNNN NNNNNNNKTS  180
LRLDDWVLCR IYKKNKSSNY SNGNNGNIFN TQRSAAGEEA EDSFDEMVTP QLQLNPIRHP  240
ALLQRAPTNF MALLDNDGNF FEGLLTTTDK EGHVANSTNP MNNYDQLENA GPSLLPKCSL  300
ASPFWTEAGT IAALLPPKQF HGCSTGNIGV SHSSSSNSNG GHPVATTTVL SQQIPHREPY  360
PRQTTILGSV GDATSSALFR PPCQLSGVNW GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-731419912170NO APICAL MERISTEM PROTEIN
1ut4_B4e-731419912170NO APICAL MERISTEM PROTEIN
1ut7_A4e-731419912170NO APICAL MERISTEM PROTEIN
1ut7_B4e-731419912170NO APICAL MERISTEM PROTEIN
3swm_A6e-731419915173NAC domain-containing protein 19
3swm_B6e-731419915173NAC domain-containing protein 19
3swm_C6e-731419915173NAC domain-containing protein 19
3swm_D6e-731419915173NAC domain-containing protein 19
3swp_A6e-731419915173NAC domain-containing protein 19
3swp_B6e-731419915173NAC domain-containing protein 19
3swp_C6e-731419915173NAC domain-containing protein 19
3swp_D6e-731419915173NAC domain-containing protein 19
4dul_A4e-731419912170NAC domain-containing protein 19
4dul_B4e-731419912170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087204.10.0NAC transcription factor 29-like
SwissprotA0SPJ61e-107NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLA0A199W1010.0A0A199W101_ANACO; NAC transcription factor NAM-B2
STRINGXP_008800137.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.18e-85NAC domain containing protein 2
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]