PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023468.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 430aa MW: 47242.4 Da PI: 6.7976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023468.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9e-05	321	358	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A eYIk L Aco023468.1 321 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAFEYIKFL 358 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.46E-5	319	363	No hit	No description
SuperFamily	SSF47459	6.28E-11	319	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-8	323	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MADDLHTAGI CSGRGSWWMN SARSSAGLDG QIAISSTSIA DIDARGSTFS WSAGESKSRS 60 CEESTGSASA GSSITFQDTH LNPSMNWNET LLGGKADTRI QAMHQDDLSK RPYWHDGLLI 120 DSYRAHVGVE ESSTNLFKEI NHGKNFLLDK HLLNSSNEAS ASFGSPSRLL QTFITSEANP 180 PLSIYGNPYL HHQSSTATAS HESLSELLQP SWTKFSQLVK PSPLKNQLQF SNSTPFWNPS 240 STAMNEVSSG FYPSVPSQFI SQQKPSYSNL IVKEKSLLNS EQVQDSCSSA KKKSSSGDDH 300 QPTFKKPRIE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AFEYIKFLHE 360 QVSVLSTPYM KNEDLTQHQQ GLERLNDGEG PKQDLRSRGL CLVPITSTYP VATETVAEFW 420 HPTFGGSFR*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MADDLHTAGI CSGRGSWWMN SARSSAGLDG QIAISSTSIA DIDARGSTFS WSAGESKSRS  60
CEESTGSASA GSSITFQDTH LNPSMNWNET LLGGKADTRI QAMHQDDLSK RPYWHDGLLI  120
DSYRAHVGVE ESSTNLFKEI NHGKNFLLDK HLLNSSNEAS ASFGSPSRLL QTFITSEANP  180
PLSIYGNPYL HHQSSTATAS HESLSELLQP SWTKFSQLVK PSPLKNQLQF SNSTPFWNPS  240
STAMNEVSSG FYPSVPSQFI SQQKPSYSNL IVKEKSLLNS EQVQDSCSSA KKKSSSGDDH  300
QPTFKKPRIE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AFEYIKFLHE  360
QVSVLSTPYM KNEDLTQHQQ GLERLNDGEG PKQDLRSRGL CLVPITSTYP VATETVAEFW  420
HPTFGGSFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085888.1	0.0	transcription factor bHLH112-like isoform X2
TrEMBL	A0A2H3XX26	1e-132	A0A2H3XX26_PHODC; transcription factor bHLH123-like
STRING	XP_008789835.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	8e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco023468.1