PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023285.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 285aa    MW: 32124.2 Da    PI: 6.8839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023285.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.7e-53161431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yL++kv+g+ l++  +i+evd+yk++PwdLp+++  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++  + ++
  Aco023285.1  16 LPPGFRFHPTDEELVVHYLCRKVSGRCLPV-PIIAEVDLYKYDPWDLPERALFGQKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIRPSgSN 112
                  79****************************.88***************8877899*************************************998667 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vg+kk Lvfy+g+apkg ktdW+mheyrl
  Aco023285.1 113 RPVGIKKALVFYHGKAPKGIKTDWIMHEYRL 143
                  78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-6411170IPR003441NAC domain
PROSITE profilePS5100561.29516170IPR003441NAC domain
PfamPF023652.8E-2717143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVKEMRRADA EAQLNLPPGF RFHPTDEELV VHYLCRKVSG RCLPVPIIAE VDLYKYDPWD  60
LPERALFGQK EWYFFTPRDR KYPNGSRPNR AAGRGYWKAT GADKPIRPSG SNRPVGIKKA  120
LVFYHGKAPK GIKTDWIMHE YRLAEANRAP GGKKGNLRLD DWVLCRLYNK KNSWARTAAA  180
DSMETSHDAG SEAINTPESD IDHDDYHLFD EMAGTGALQY RPFDQMPQLR PTAAGGFPIV  240
EKKEESDWFT ELNLEDLQSS LAVFGSGAAP SLDVSSQDYF FSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-9251763174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087639.10.0NAC domain-containing protein 68-like
SwissprotQ52QH41e-112NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A199VH470.0A0A199VH47_ANACO; NAC domain-containing protein 68
STRINGXP_008782755.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.16e-89NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]