PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023266.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 216aa MW: 24725.1 Da PI: 8.9343

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023266.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +v+ +G ++W++ + + g++R++k+c++rw++yl Aco023266.1 14 RGKWTEEEDRILASYVEAHGVENWAKLPMKAGLNRSGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Aco023266.1 67 RGNITQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTFL 112 7999****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.511	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.31E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.049	62	116	IPR017930	Myb domain
SMART	SM00717	2.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	7.94E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRPRTHPCSQ VLSRGKWTEE EDRILASYVE AHGVENWAKL PMKAGLNRSG KSCRLRWLNY 60 LRPNIKRGNI TQDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT FLKKKVHRAN 120 SNLIDKPVST VSSPSQGTIK KTKTVHIDPK ANAQVQLWGT STEGECSGSI DWLLQQWCNP 180 PIIPNEERLD EWIVGEEGKL FFTWEDLLVD ENANS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020110371.1	1e-158	transcription factor MYB82-like
Swissprot	Q38850	1e-51	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A199USY3	1e-154	A0A199USY3_ANACO; Transcription repressor MYB5
STRING	XP_008786727.1	4e-67	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-54	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Aco023266.1

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]