PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco023263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24703 Da PI: 8.2203 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +v+ +G ++W++ + + g++R++k+c++rw++yl Aco023263.1 14 RGKWTEEEDRILASYVEAHGVENWAKLPIKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Aco023263.1 67 RGNITQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTFL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.401 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.69E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.049 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.68E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRPRTHPCSQ VLSRGKWTEE EDRILASYVE AHGVENWAKL PIKAGLNRCG KSCRLRWLNY 60 LRPNIKRGNI TQDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT FLKKKVHRAN 120 SNLIDEPVST VSSPSQGTIK KMKTIHIDPK ANAQVQLWGT STEGECNGST DWLLQQWCNP 180 LIMSNEERVD EWIAGEEGKL VFSWEDLLVD ENANS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020110421.1 | 1e-158 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-52 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A199VAQ7 | 1e-155 | A0A199VAQ7_ANACO; Transcription repressor MYB5 | ||||
STRING | XP_008786727.1 | 2e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-55 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Aco023263.1 |
Publications ? help Back to Top | |||
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