PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco023262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30537.1 Da PI: 6.2586 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ Ed+ l +++k++G g W+ + + g++R++k+c++rw +yl Aco023262.1 14 KGAWSVSEDKMLTEYIKLHGEGKWRDLPTRAGLKRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E el+++++k+lG++ W++Iar+++ gRt++++k++w++ Aco023262.1 67 RGNISDDEVELIIKLHKLLGNR-WSLIARRLP-GRTDNEIKNYWNTN 111 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.121 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.17E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.525 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.57E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRRPCCSKE GQNKGAWSVS EDKMLTEYIK LHGEGKWRDL PTRAGLKRCG KSCRLRWMNY 60 LRPGIKRGNI SDDEVELIIK LHKLLGNRWS LIARRLPGRT DNEIKNYWNT NLSKKAEPRQ 120 TLHNSKRRDG NVLDSSEATA TADKQSHQVI RTKAVRCTKV YLPTLQDLDD YAKPNNENIA 180 PPSNETPSSF SLPPHAGSID LFMDFDMEEL MSSFADDGFY SLCNNNEDKD DGNAIGSYAG 240 EDSLWFSETI QEEWRENNGT DHDDFACI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083093.1 | 0.0 | transcription repressor MYB6-like isoform X1 | ||||
Swissprot | Q9FJA2 | 2e-58 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A199UTF1 | 1e-148 | A0A199UTF1_ANACO; Transcription factor TT2 | ||||
STRING | XP_008784294.1 | 1e-103 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 9e-61 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco023262.1 |